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William Davis cf47ce959b This is now more or less functional on the test data. 8 months ago
README.md This is now more or less functional on the test data. 8 months ago
main.awk This is now more or less functional on the test data. 8 months ago

README.md

Oligonucleotide format

This is a script that takes messy stdin and outputs a csv appropriate for ordering primers from Sigma Aldrich.

To do

  • Broaden gene name field regex
  • Better sequence regex
  • Handle different field separator types (copying from Excel is the expected use case)
  • Handle junk data like extraneous lines
  • Fix output format accuracy
  • Handle forward and reverse primers appropriately
  • Is there a better way to match fields than a for loop ( i=1;i<=NF;i++) ?
  • Lint